Variant report

Variant	rs9293911
Chromosome Location	chr6:73470432-73470433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10046418	0.89[MEX][hapmap];0.86[AMR][1000 genomes]
rs12213677	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214158	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs2144089	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2840792	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2840794	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2982750	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2982751	0.86[AMR][1000 genomes]
rs2982752	0.86[AMR][1000 genomes]
rs4538671	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs62410661	0.98[EUR][1000 genomes]
rs6453601	0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs6906492	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937555	0.98[EUR][1000 genomes]
rs7743692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7756180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293907	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293909	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs9442841	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.99[EUR][1000 genomes]
rs9442842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446743	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446746	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.98[EUR][1000 genomes]
rs9446749	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9689048	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73467800-73470600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:73469200-73470600	Enhancers	Fetal Brain Female	brain
3	chr6:73469200-73471400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:73469400-73470600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:73469600-73470600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr6:73469600-73470600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:73469600-73470600	Enhancers	Brain Angular Gyrus	brain
8	chr6:73469800-73470600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:73469800-73470600	Enhancers	NH-A	brain
10	chr6:73469800-73470800	Flanking Active TSS	Fetal Heart	heart
11	chr6:73470000-73470600	Active TSS	Aorta	Aorta
12	chr6:73470000-73471400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:73470200-73470600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:73470200-73470600	Weak transcription	HSMM	muscle
15	chr6:73470200-73471400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr6:73470200-73474000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:73470200-73478800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:73470400-73470600	Flanking Active TSS	HSMMtube	muscle
19	chr6:73470400-73470600	Enhancers	Osteobl	bone
20	chr6:73470400-73470800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:73470400-73470800	Enhancers	Liver	Liver
22	chr6:73470400-73471600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:73470400-73471600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:73470400-73475000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr6:73470400-73492600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:73470400-73492600	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links