Variant report

Variant	rs6453601
Chromosome Location	chr6:73451906-73451907
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10046418	0.86[CEU][hapmap]
rs10498884	1.00[CHB][hapmap]
rs12213677	0.92[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs12214158	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2982751	0.80[CEU][hapmap]
rs4538671	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62410661	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6906492	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs6931185	0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs72937555	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7743692	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs7756180	0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9293907	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9293909	0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9293910	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9293911	0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9442841	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9442842	0.92[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9446743	0.93[EUR][1000 genomes]
rs9446746	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9446749	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9689048	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73437800-73455200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:73438400-73455400	Weak transcription	HMEC	breast
3	chr6:73443200-73455400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73449600-73452600	Enhancers	Psoas Muscle	Psoas
5	chr6:73450000-73458400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:73450200-73455000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:73451200-73452000	Enhancers	GM12878-XiMat	blood
8	chr6:73451200-73453400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr6:73451200-73457600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:73451200-73458000	Weak transcription	Primary B cells from cord blood	blood
11	chr6:73451600-73452000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:73451600-73452200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:73451600-73452400	Enhancers	HSMMtube	muscle
14	chr6:73451800-73452000	Enhancers	Fetal Heart	heart
15	chr6:73451800-73452000	Active TSS	Skeletal Muscle Female	skeletal muscle
16	chr6:73451800-73452600	Active TSS	Aorta	Aorta
17	chr6:73451800-73452600	Enhancers	HSMM	muscle
18	chr6:73451800-73458400	Weak transcription	Primary B cells from peripheral blood	blood

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