Variant report

Variant	rs9446749
Chromosome Location	chr6:73468638-73468639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10498884	1.00[CHB][hapmap]
rs12213677	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs12214158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2144089	0.86[CEU][hapmap]
rs2840792	0.85[CEU][hapmap]
rs2840794	0.85[CEU][hapmap]
rs2982750	0.85[CEU][hapmap]
rs4538671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62410661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62410662	0.84[ASN][1000 genomes]
rs62410663	0.84[ASN][1000 genomes]
rs62410664	0.84[ASN][1000 genomes]
rs6453601	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6906492	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs6931185	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs72937555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743692	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7756180	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9293907	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9293909	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9293910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293911	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9442841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442842	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs9446743	0.93[EUR][1000 genomes]
rs9446746	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9689048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73452600-73469800	Weak transcription	Aorta	Aorta
2	chr6:73460000-73468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:73460000-73469600	Weak transcription	HSMM	muscle
4	chr6:73461000-73468800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:73464600-73469800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73465200-73469800	Enhancers	Fetal Heart	heart
7	chr6:73465600-73470400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:73466200-73469200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:73467200-73469600	Weak transcription	Osteobl	bone
10	chr6:73467200-73470200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr6:73467800-73469200	Weak transcription	Psoas Muscle	Psoas
12	chr6:73467800-73470600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:73468000-73468800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:73468200-73468800	Enhancers	GM12878-XiMat	blood
15	chr6:73468200-73470200	Enhancers	NHEK	skin
16	chr6:73468400-73469000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:73468400-73469400	Weak transcription	Brain Germinal Matrix	brain
18	chr6:73468400-73469600	Weak transcription	Adipose Nuclei	Adipose
19	chr6:73468400-73470400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:73468600-73470000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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