Variant report

Variant	rs62410663
Chromosome Location	chr6:73481293-73481294
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10498884	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12214158	0.84[ASN][1000 genomes]
rs4538671	0.84[ASN][1000 genomes]
rs62410661	0.84[ASN][1000 genomes]
rs62410662	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62410664	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62412463	0.92[ASN][1000 genomes]
rs72937555	0.84[ASN][1000 genomes]
rs7775459	0.91[AFR][1000 genomes]
rs9293910	0.84[ASN][1000 genomes]
rs9442841	0.84[ASN][1000 genomes]
rs9446746	0.84[ASN][1000 genomes]
rs9446749	0.84[ASN][1000 genomes]
rs9689048	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73470400-73492600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73470400-73492600	Weak transcription	Psoas Muscle	Psoas
3	chr6:73478600-73482400	Enhancers	Fetal Heart	heart
4	chr6:73479200-73481400	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:73479600-73487200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73479600-73507800	Weak transcription	Primary T cells from cord blood	blood
7	chr6:73480200-73484600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:73480800-73493800	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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