Variant report

Variant	rs7775459
Chromosome Location	chr6:73478574-73478575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59587629	1.00[AMR][1000 genomes]
rs60456346	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60485537	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62410663	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73470200-73478800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:73470400-73492600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73470400-73492600	Weak transcription	Psoas Muscle	Psoas
4	chr6:73470800-73479400	Weak transcription	HSMM	muscle
5	chr6:73472400-73479200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:73473800-73478600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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