Variant report

Variant	rs11969811
Chromosome Location	chr6:73508656-73508657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11962810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964308	1.00[AMR][1000 genomes]
rs11966403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16882974	1.00[AMR][1000 genomes]
rs16883008	1.00[AMR][1000 genomes]
rs28537896	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59662349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60200264	1.00[AMR][1000 genomes]
rs6900269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7755733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73501000-73517200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:73508000-73509200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73508000-73509800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:73508200-73509000	Enhancers	Psoas Muscle	Psoas
5	chr6:73508400-73509000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73508400-73521800	Weak transcription	HMEC	breast
7	chr6:73508600-73519400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:73508600-73521600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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