Variant report

Variant	rs10498905
Chromosome Location	chr6:76845646-76845647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10046105	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16887144	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7739776	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7756681	1.00[ASN][1000 genomes]
rs7759973	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7769591	0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9443211	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9443212	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9443213	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9443215	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9447615	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9447632	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9447633	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9447639	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9447641	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9447642	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1028340	chr6:76410921-76960225	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv538319	chr6:76410921-76960225	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1027202	chr6:76732883-76960225	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76845000-76845800	Enhancers	Pancreas	Pancrea
2	chr6:76845600-76845800	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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