Variant report

Variant	rs10498921
Chromosome Location	chr6:80274067-80274068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80270471..80272180-chr6:80272738..80275270,2	K562	blood:
2	chr6:80253997..80256924-chr6:80273838..80276690,2	K562	blood:
3	chr6:80268154..80270191-chr6:80271726..80274715,2	K562	blood:

Variant related genes	Relation type
ENSG00000272137	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1158770	0.86[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1158771	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965020	0.92[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1385536	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1385537	0.85[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs1485370	0.86[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1485372	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504368	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16890774	0.86[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890835	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890862	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890875	0.84[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17335231	0.84[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17727505	0.85[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2575204	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2575208	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2629472	0.81[EUR][1000 genomes]
rs2629473	0.80[EUR][1000 genomes]
rs2655666	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2655677	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2655679	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2655680	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2655703	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2803188	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2803189	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2803197	1.00[CEU][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41269343	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55830218	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55989614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56087572	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56745436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61152095	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411332	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411348	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413360	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413362	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62413363	0.82[EUR][1000 genomes]
rs62413366	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413370	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62413372	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413377	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413382	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413385	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413387	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413388	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413389	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413390	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413391	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413395	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413396	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62413399	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62413401	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62413416	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6454124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907133	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6917186	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6920635	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921102	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925212	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926534	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934060	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73747413	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73750727	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7745158	0.84[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745429	0.84[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749776	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760677	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761245	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763266	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763268	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768651	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7768724	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769778	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7772722	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs992872	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028607	chr6:79853272-80767716	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv886301	chr6:80111104-80339088	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv886302	chr6:80111104-80355973	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1027388	chr6:80113449-80355973	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv830707	chr6:80134625-80325171	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv1029259	chr6:80142754-80340332	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
7	nsv463906	chr6:80240951-80313297	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv604052	chr6:80240951-80313297	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1018318	chr6:80241029-80465282	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80255000-80280000	Weak transcription	Aorta	Aorta
2	chr6:80255600-80279400	Weak transcription	HMEC	breast
3	chr6:80255600-80280000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:80255800-80275400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:80256000-80280600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:80257400-80278600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:80257400-80278600	Weak transcription	Fetal Kidney	kidney
8	chr6:80257600-80274200	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:80257800-80277800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:80258600-80279200	Weak transcription	Fetal Lung	lung
11	chr6:80260600-80274400	Weak transcription	Fetal Brain Female	brain
12	chr6:80260600-80278600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:80260800-80275400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:80260800-80280200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:80260800-80280200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr6:80260800-80280400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:80260800-80283000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:80261800-80280200	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:80263200-80280200	Weak transcription	Brain Anterior Caudate	brain
20	chr6:80268000-80279600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:80268000-80280200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:80268400-80280200	Weak transcription	Fetal Stomach	stomach
23	chr6:80268800-80279200	Weak transcription	HepG2	liver
24	chr6:80270200-80280200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:80271600-80278600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:80271600-80279200	Weak transcription	HSMM	muscle
27	chr6:80273200-80275000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:80273800-80274200	Enhancers	Stomach Mucosa	stomach
29	chr6:80274000-80274800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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