Variant report

Variant	rs10499842
Chromosome Location	chr7:78971036-78971037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10247724	0.82[ASN][1000 genomes]
rs1100309	0.85[JPT][hapmap]
rs11763567	0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs12154356	0.91[YRI][hapmap]
rs12154470	0.86[YRI][hapmap]
rs1406157	0.86[YRI][hapmap]
rs1528270	0.86[YRI][hapmap]
rs17152290	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17152314	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17152336	0.80[JPT][hapmap]
rs2069132	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2107992	0.89[JPT][hapmap];0.90[YRI][hapmap]
rs2158707	0.89[JPT][hapmap];0.90[YRI][hapmap]
rs2242505	0.91[YRI][hapmap]
rs3884514	0.89[JPT][hapmap];0.95[YRI][hapmap]
rs4727838	0.91[YRI][hapmap]
rs56274109	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs56355133	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56410623	0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6466593	0.95[YRI][hapmap]
rs66878128	0.87[ASN][1000 genomes]
rs6953105	0.89[JPT][hapmap];0.91[YRI][hapmap]
rs6956190	0.94[JPT][hapmap]
rs73156018	0.85[ASN][1000 genomes]
rs73156055	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs73156080	0.92[AFR][1000 genomes]
rs7797165	0.89[JPT][hapmap];0.90[YRI][hapmap]
rs848958	0.85[JPT][hapmap]
rs860246	0.84[JPT][hapmap]
rs9640776	0.89[JPT][hapmap];0.95[YRI][hapmap]
rs9641579	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9641583	0.89[JPT][hapmap];0.90[YRI][hapmap]
rs9641588	0.84[JPT][hapmap];0.85[YRI][hapmap]
rs9641589	0.85[JPT][hapmap];0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2762681	chr7:78958864-78982993	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78967600-78979600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78967800-78971200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78967800-78971400	Weak transcription	Brain Anterior Caudate	brain
4	chr7:78967800-78975800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78970200-78971200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78970800-78971800	Enhancers	Brain Hippocampus Middle	brain
7	chr7:78971000-78971800	Enhancers	Brain Inferior Temporal Lobe	brain

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