Variant report

Variant	rs66878128
Chromosome Location	chr7:78972820-78972821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10253616	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10499842	0.87[ASN][1000 genomes]
rs1528261	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17152290	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17152314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17152352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17152454	0.82[EUR][1000 genomes]
rs2069132	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2107992	0.83[EUR][1000 genomes]
rs2158707	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2364912	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3884514	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55739903	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56011939	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56191332	0.82[EUR][1000 genomes]
rs56410623	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57763664	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61046785	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66627069	0.82[EUR][1000 genomes]
rs66784949	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66930031	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs67038446	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67145529	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67945427	0.82[EUR][1000 genomes]
rs68016561	0.82[EUR][1000 genomes]
rs6956190	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73147403	0.82[EUR][1000 genomes]
rs73156055	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73156080	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73704183	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7456505	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7456591	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7797165	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9640776	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9641579	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9641582	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9641583	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9641588	0.82[EUR][1000 genomes]
rs9641589	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv1029799	chr7:78608097-79061737	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831041	chr7:78819499-78973222	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2764028	chr7:78874740-79112630	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2762681	chr7:78958864-78982993	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78967600-78979600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr7:78967800-78975800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:78971800-78979200	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:78971800-78981800	Weak transcription	Brain Angular Gyrus	brain

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