Variant report

Variant	rs10500117
Chromosome Location	chr7:129125352-129125353
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10954233	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10954234	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11762711	0.81[ASN][1000 genomes]
rs12155142	0.92[EUR][1000 genomes]
rs12667232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12671604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2305326	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34000750	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34794308	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34916100	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35131522	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35277123	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35544616	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4728165	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4731578	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4731579	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4731580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731581	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4731582	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4731583	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62489110	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs644723	0.86[JPT][hapmap]
rs691124	0.86[JPT][hapmap]
rs691158	0.86[JPT][hapmap]
rs691435	0.86[JPT][hapmap]
rs692697	0.86[JPT][hapmap]
rs6943021	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs753336	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs966481	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129080000-129128000	Weak transcription	HUVEC	blood vessel
2	chr7:129093400-129134800	Weak transcription	Right Atrium	heart
3	chr7:129097600-129128600	Weak transcription	NH-A	brain
4	chr7:129101600-129128600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr7:129103000-129141200	Weak transcription	Hela-S3	cervix
6	chr7:129103200-129129600	Weak transcription	Dnd41	blood
7	chr7:129103200-129135400	Weak transcription	HepG2	liver
8	chr7:129104200-129141600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:129105400-129127400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr7:129108800-129128600	Weak transcription	Osteobl	bone
11	chr7:129109200-129125800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:129111800-129125400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:129111800-129125800	Weak transcription	HMEC	breast
14	chr7:129111800-129128800	Weak transcription	HSMM	muscle
15	chr7:129112200-129129000	Weak transcription	NHDF-Ad	bronchial
16	chr7:129112200-129134600	Weak transcription	Fetal Heart	heart
17	chr7:129112600-129125800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:129116400-129127400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:129116600-129125400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:129117200-129126200	Strong transcription	K562	blood
21	chr7:129117600-129128000	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:129120000-129129600	Weak transcription	Small Intestine	intestine
23	chr7:129120400-129126000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr7:129120800-129130000	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:129121000-129128000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr7:129121200-129129200	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr7:129121200-129130800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr7:129121600-129129200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:129121600-129129800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:129121600-129132600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:129121800-129125400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:129121800-129129200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr7:129122000-129141800	Weak transcription	Right Ventricle	heart
34	chr7:129122400-129126000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr7:129122600-129126400	Strong transcription	Brain Anterior Caudate	brain
36	chr7:129123000-129125400	Weak transcription	NHEK	skin
37	chr7:129123000-129126000	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:129123000-129128200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr7:129123000-129128200	Weak transcription	Fetal Stomach	stomach
40	chr7:129123400-129125600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:129124000-129125400	Weak transcription	Left Ventricle	heart
42	chr7:129124000-129137200	Weak transcription	Esophagus	oesophagus
43	chr7:129124400-129126000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr7:129124400-129126000	Strong transcription	Skeletal Muscle Male	skeletal muscle
45	chr7:129124400-129128800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:129124400-129132000	Weak transcription	Psoas Muscle	Psoas
47	chr7:129124800-129128000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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