Variant report
| Variant | rs12155142 |
|---|---|
| Chromosome Location | chr7:129144214-129144215 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:129142939..129144496-chr7:129249882..129252003,2 | K562 | blood: | |
| 2 | chr7:129141127..129144491-chr7:129250183..129252967,6 | MCF-7 | breast: | |
| 3 | chr7:129139279..129144298-chr7:129248057..129253593,12 | MCF-7 | breast: | |
| 4 | chr20:52793289..52795473-chr7:129142646..129144737,2 | MCF-7 | breast: | |
| 5 | chr1:108505293..108507880-chr7:129142330..129144736,2 | MCF-7 | breast: | |
| 6 | chr7:129142735..129144736-chr7:129243609..129245473,3 | K562 | blood: | |
| 7 | chr7:129143239..129144913-chr7:129153487..129155752,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000230489 | Chromatin interaction |
| ENSG00000273329 | Chromatin interaction |
| ENSG00000134215 | Chromatin interaction |
| ENSG00000106459 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10500117 | 0.92[EUR][1000 genomes] |
| rs10954233 | 0.86[EUR][1000 genomes] |
| rs10954234 | 0.86[EUR][1000 genomes] |
| rs1248452 | 0.80[ASN][1000 genomes] |
| rs12667232 | 0.87[EUR][1000 genomes] |
| rs12671604 | 0.87[EUR][1000 genomes] |
| rs2305326 | 0.87[EUR][1000 genomes] |
| rs34000750 | 0.91[EUR][1000 genomes] |
| rs34794308 | 0.88[EUR][1000 genomes] |
| rs34916100 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35131522 | 0.88[EUR][1000 genomes] |
| rs35277123 | 0.86[EUR][1000 genomes] |
| rs35544616 | 0.87[EUR][1000 genomes] |
| rs4728165 | 0.87[EUR][1000 genomes] |
| rs4731578 | 0.88[EUR][1000 genomes] |
| rs4731579 | 0.87[EUR][1000 genomes] |
| rs4731580 | 0.91[EUR][1000 genomes] |
| rs4731581 | 0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4731582 | 0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4731583 | 0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs62489110 | 0.87[EUR][1000 genomes] |
| rs6943021 | 0.87[EUR][1000 genomes] |
| rs753336 | 0.87[EUR][1000 genomes] |
| rs966481 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831128 | chr7:129063040-129240800 | Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:129143000-129148800 | Weak transcription | Right Atrium | heart |
| 2 | chr7:129143200-129154000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
