Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10500703	0.83[CEU][hapmap]
rs11822608	0.88[EUR][1000 genomes]
rs12788149	0.88[EUR][1000 genomes]
rs12788830	0.88[EUR][1000 genomes]
rs12793685	0.88[EUR][1000 genomes]
rs12793878	0.88[EUR][1000 genomes]
rs12808779	0.83[CEU][hapmap]
rs16937958	0.87[EUR][1000 genomes]
rs16938063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes]
rs2121312	0.82[CHB][hapmap]
rs2311434	0.88[EUR][1000 genomes]
rs34297209	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34617462	0.88[EUR][1000 genomes]
rs34922792	0.90[EUR][1000 genomes]
rs35022013	0.90[EUR][1000 genomes]
rs35976355	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3751095	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs3751096	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4584570	0.84[EUR][1000 genomes]
rs72852616	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797209	chr11:8417452-8474015	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10500704	TRIM66	cis	Whole Blood	GTEx

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8446400-8464000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:8447000-8453800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:8447800-8456000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:8447800-8464200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:8448000-8461000	Weak transcription	Ovary	ovary
6	chr11:8448200-8455200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:8448200-8456000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:8448800-8454400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:8449200-8452000	Weak transcription	Gastric	stomach
10	chr11:8451200-8451600	Enhancers	Fetal Heart	heart
11	chr11:8451200-8451600	Enhancers	Left Ventricle	heart
12	chr11:8451200-8451600	Enhancers	Right Ventricle	heart

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