Variant report

Variant	rs12788149
Chromosome Location	chr11:8406930-8406931
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8405491..8409851-chr11:8412424..8416034,4	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10500704	0.88[EUR][1000 genomes]
rs11822608	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12362113	0.81[ASN][1000 genomes]
rs12788830	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12790154	0.81[EUR][1000 genomes]
rs12793685	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12793878	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16937956	0.83[AFR][1000 genomes]
rs16937958	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16938063	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2311434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34297209	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34617462	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34922792	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35022013	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35976355	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4584570	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112091	0.83[ASN][1000 genomes]
rs7122890	0.83[ASN][1000 genomes]
rs72852616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12788149	TRIM66	cis	Whole Blood	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8397600-8408200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8398000-8408000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:8403000-8407200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:8403600-8407000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:8403600-8408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:8404600-8408400	Weak transcription	NHEK	skin
7	chr11:8404800-8408400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:8405000-8408200	Weak transcription	Esophagus	oesophagus
9	chr11:8406200-8408000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:8406200-8408200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr11:8406200-8408600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:8406200-8410600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:8406400-8407000	Enhancers	Primary B cells from peripheral blood	blood
14	chr11:8406400-8408000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr11:8406600-8408200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:8406600-8409800	Weak transcription	Fetal Stomach	stomach
17	chr11:8406600-8409800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr11:8406600-8410800	Weak transcription	Fetal Kidney	kidney
19	chr11:8406800-8408000	Weak transcription	Fetal Thymus	thymus
20	chr11:8406800-8408200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:8406800-8410400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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