Variant report

Variant	rs12362113
Chromosome Location	chr11:8400566-8400567
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11822608	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12788149	0.81[ASN][1000 genomes]
rs12788830	0.81[ASN][1000 genomes]
rs12793685	0.81[ASN][1000 genomes]
rs12793878	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs16937958	0.81[ASN][1000 genomes]
rs16938063	0.89[CHD][hapmap]
rs2311434	0.81[ASN][1000 genomes]
rs4584570	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7112091	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7121032	0.86[ASN][1000 genomes]
rs7122890	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72852616	0.81[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs12362113	HBB	cis	cerebellum	SCAN
rs12362113	RPL27A	cis	parietal	SCAN
rs12362113	TRIM66	cis	Whole Blood	GTEx
rs12362113	ST5	cis	cerebellum	SCAN
rs12362113	SNORA45	cis	parietal	SCAN
rs12362113	OR52E8	cis	cerebellum	SCAN
rs12362113	WDR8	trans	parietal	SCAN
rs12362113	OR56B4	cis	parietal	SCAN
rs12362113	RPL27A	cis	cerebellum	SCAN
rs12362113	STK33	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8397600-8408200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8398000-8408000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links