Variant report

Variant	rs7112091
Chromosome Location	chr11:8403392-8403393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11041897	0.93[AFR][1000 genomes]
rs11822608	0.83[ASN][1000 genomes]
rs12362113	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12788149	0.83[ASN][1000 genomes]
rs12788830	0.83[ASN][1000 genomes]
rs12793685	0.83[ASN][1000 genomes]
rs12793878	0.83[ASN][1000 genomes]
rs16937958	0.83[ASN][1000 genomes]
rs16938063	0.89[CHD][hapmap]
rs2123990	0.94[AFR][1000 genomes]
rs2311434	0.83[ASN][1000 genomes]
rs4584570	0.83[ASN][1000 genomes]
rs7121032	0.87[ASN][1000 genomes]
rs7122890	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72852616	0.83[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs7112091	STK33	cis	cerebellum	SCAN
rs7112091	RPL27A	cis	parietal	SCAN
rs7112091	OR52W1	cis	cerebellum	SCAN
rs7112091	OR56B4	cis	parietal	SCAN
rs7112091	SNORA45	cis	parietal	SCAN
rs7112091	OR52E8	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8397600-8408200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8398000-8408000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:8402600-8403600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:8403000-8403600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:8403000-8407200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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