Variant report

Variant	rs12790154
Chromosome Location	chr11:8405148-8405149
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1026021	0.81[CEU][hapmap]
rs10500703	0.87[CEU][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11822608	0.81[EUR][1000 genomes]
rs12788149	0.81[EUR][1000 genomes]
rs12788830	0.81[EUR][1000 genomes]
rs12793685	0.81[EUR][1000 genomes]
rs12793878	0.81[EUR][1000 genomes]
rs12808779	0.87[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16937958	0.81[EUR][1000 genomes]
rs16938253	0.81[CEU][hapmap]
rs2311434	0.81[EUR][1000 genomes]
rs34378489	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34617462	0.81[EUR][1000 genomes]
rs72851485	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72852616	0.81[EUR][1000 genomes]
rs7479191	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12790154	TRIM66	cis	Whole Blood	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8397600-8408200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:8398000-8408000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:8403000-8407200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:8403600-8407000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:8403600-8408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:8403800-8406200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:8404600-8408400	Weak transcription	NHEK	skin
8	chr11:8404800-8406000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:8404800-8408400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:8405000-8406000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:8405000-8408200	Weak transcription	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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