Variant report

Variant	rs10500838
Chromosome Location	chr11:19113069-19113070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10500840	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16924998	1.00[AMR][1000 genomes]
rs16936120	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936126	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936146	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41420346	0.87[AFR][1000 genomes]
rs59309964	1.00[AMR][1000 genomes]
rs60139631	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19108200-19113400	Enhancers	HUVEC	blood vessel
2	chr11:19110000-19115400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:19112000-19115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:19112200-19115000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:19112400-19115200	Weak transcription	NH-A	brain
6	chr11:19112800-19113200	Enhancers	NHEK	skin
7	chr11:19112800-19115200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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