Variant report

Variant	rs16936120
Chromosome Location	chr11:19109326-19109327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10500838	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10500840	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10833055	0.94[YRI][hapmap]
rs16924998	1.00[AMR][1000 genomes]
rs16936124	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936126	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936137	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16936146	0.86[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59309964	1.00[AMR][1000 genomes]
rs60139631	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19102600-19109400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:19104800-19111800	Weak transcription	Esophagus	oesophagus
3	chr11:19108200-19113400	Enhancers	HUVEC	blood vessel
4	chr11:19108600-19110000	Enhancers	Osteobl	bone
5	chr11:19108800-19109600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:19108800-19110000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:19108800-19110000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:19109000-19110000	Enhancers	NH-A	brain
9	chr11:19109200-19109800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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