Variant report

Variant	rs10502609
Chromosome Location	chr18:30333190-30333191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11081780	0.88[CEU][hapmap]
rs11081781	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11660243	0.85[ASN][1000 genomes]
rs1403753	0.88[CEU][hapmap]
rs1965500	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4799662	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62092147	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs749676	0.82[ASW][hapmap];0.88[CHB][hapmap];0.84[GIH][hapmap];0.92[LWK][hapmap];0.89[YRI][hapmap];0.81[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30323000-30335000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:30324000-30333800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr18:30328800-30336000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:30330200-30335600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr18:30331600-30333800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:30331800-30334600	Weak transcription	HepG2	liver
7	chr18:30332800-30333400	Weak transcription	Primary B cells from cord blood	blood
8	chr18:30332800-30333800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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