Variant report

Variant	rs10503697
Chromosome Location	chr8:20762512-20762513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10095438	0.99[ASN][1000 genomes]
rs10102368	0.93[ASN][1000 genomes]
rs10106561	0.99[ASN][1000 genomes]
rs1016650	0.84[ASN][1000 genomes]
rs11782315	0.89[ASN][1000 genomes]
rs1348196	0.97[ASN][1000 genomes]
rs1441783	0.81[ASN][1000 genomes]
rs1441784	0.89[ASN][1000 genomes]
rs1441786	0.85[CHB][hapmap]
rs17093328	0.99[ASN][1000 genomes]
rs17093344	0.90[ASN][1000 genomes]
rs17093353	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17093359	0.84[ASN][1000 genomes]
rs17093371	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17093374	0.90[ASN][1000 genomes]
rs17116662	0.87[ASN][1000 genomes]
rs17495275	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2119697	0.90[ASN][1000 genomes]
rs2410671	0.95[ASN][1000 genomes]
rs28431990	0.81[ASN][1000 genomes]
rs4961409	0.83[ASN][1000 genomes]
rs4961413	0.82[ASN][1000 genomes]
rs4961415	0.88[ASN][1000 genomes]
rs4961417	0.83[ASN][1000 genomes]
rs61382554	0.89[ASN][1000 genomes]
rs6586940	0.88[ASN][1000 genomes]
rs6586942	0.83[ASN][1000 genomes]
rs67522156	0.99[ASN][1000 genomes]
rs6988989	0.84[ASN][1000 genomes]
rs73668274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7828057	0.94[ASN][1000 genomes]
rs7840513	1.00[ASN][1000 genomes]
rs7840809	0.95[ASN][1000 genomes]
rs7844603	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032450	chr8:20514995-21033577	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv539524	chr8:20514995-21033577	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv831257	chr8:20610436-20767433	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1020160	chr8:20652610-20825810	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv539526	chr8:20652610-20825810	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1024612	chr8:20665835-20837761	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv539527	chr8:20665835-20837761	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv890645	chr8:20708335-20762512	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv890646	chr8:20714686-20843176	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1034265	chr8:20742935-21152545	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
11	nsv539528	chr8:20742935-21152545	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	nsv890647	chr8:20749895-20847332	Enhancers Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
13	nsv831258	chr8:20754932-20940380	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv967519	chr8:20760950-20764730	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10503697	SLC25A37	cis	parietal	SCAN
rs10503697	LGI3	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20761400-20764200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:20762400-20762600	Enhancers	H9 Cell Line	embryonic stem cell

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