Variant report

Variant	rs10504155
Chromosome Location	chr8:54429080-54429081
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ATP6V1H-1	chr8:54427731-54429514	XLOC_007085
2	lnc-ATP6V1H-1	chr8:54426635-54429514	NONHSAT126594

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10090582	1.00[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs10093741	1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs10216947	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6473841	0.88[ASN][1000 genomes]
rs7008165	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752674	chr8:54181147-54483747	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54411800-54433400	Weak transcription	Colon Smooth Muscle	Colon
2	chr8:54419200-54436200	Weak transcription	Pancreas	Pancrea
3	chr8:54421800-54434800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:54422800-54434800	Weak transcription	Esophagus	oesophagus
5	chr8:54426400-54433000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:54426400-54434600	Weak transcription	Fetal Muscle Leg	muscle
7	chr8:54426600-54429200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:54426600-54430000	Strong transcription	Stomach Smooth Muscle	stomach
9	chr8:54426800-54429400	Strong transcription	Aorta	Aorta
10	chr8:54427000-54429600	Strong transcription	Ovary	ovary
11	chr8:54427200-54433200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:54427200-54433400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:54427400-54433000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:54427400-54434600	Weak transcription	NHLF	lung
15	chr8:54427600-54429800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr8:54427600-54433200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:54427600-54433400	Weak transcription	HMEC	breast
18	chr8:54427800-54429200	Genic enhancers	Osteobl	bone
19	chr8:54427800-54436200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:54428000-54434400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:54428200-54429400	Weak transcription	Spleen	Spleen
22	chr8:54428200-54435000	Weak transcription	Fetal Stomach	stomach
23	chr8:54428400-54429200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr8:54428400-54429200	Enhancers	K562	blood
25	chr8:54428400-54429800	Genic enhancers	HSMM	muscle
26	chr8:54428600-54429200	Genic enhancers	Fetal Heart	heart
27	chr8:54428600-54433400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr8:54428800-54429600	Weak transcription	Right Ventricle	heart
29	chr8:54428800-54433000	Weak transcription	NH-A	brain
30	chr8:54428800-54433600	Weak transcription	Left Ventricle	heart
31	chr8:54428800-54435200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:54429000-54429400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:54429000-54433400	Weak transcription	HSMMtube	muscle

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