Variant report

Variant	rs10504258
Chromosome Location	chr8:59630314-59630315
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs16924147	1.00[MEX][hapmap]
rs57272002	0.80[AFR][1000 genomes]
rs58453784	0.92[AFR][1000 genomes]
rs58525677	0.81[AFR][1000 genomes]
rs58970755	0.92[AFR][1000 genomes]
rs60995404	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73247316	0.80[AFR][1000 genomes]
rs73247318	0.81[AFR][1000 genomes]
rs73247321	0.92[AFR][1000 genomes]
rs73247322	0.92[AFR][1000 genomes]
rs73247324	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025575	chr8:59609825-59632135	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59627000-59634600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr8:59627200-59634800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr8:59627200-59634800	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr8:59628600-59636600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:59628800-59634200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr8:59629200-59634000	Weak transcription	Dnd41	blood
7	chr8:59629200-59634600	Weak transcription	Fetal Thymus	thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links