Variant report

Variant	rs16924147
Chromosome Location	chr8:59780310-59780311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10092016	1.00[CEU][hapmap]
rs10504258	1.00[MEX][hapmap]
rs10504276	1.00[CEU][hapmap]
rs11995430	1.00[CEU][hapmap]
rs11998693	1.00[CEU][hapmap]
rs12234964	1.00[MEX][hapmap]
rs16918743	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs16924012	1.00[CEU][hapmap]
rs16924088	1.00[CEU][hapmap]
rs16924330	1.00[CEU][hapmap]
rs16924342	1.00[CEU][hapmap]
rs16924346	1.00[CEU][hapmap]
rs16924369	1.00[CEU][hapmap]
rs16924484	1.00[CEU][hapmap]
rs16924486	1.00[CEU][hapmap]
rs16924493	1.00[MEX][hapmap]
rs2166923	1.00[CEU][hapmap]
rs41468545	1.00[CEU][hapmap]
rs7821556	1.00[CEU][hapmap]
rs9643507	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:59771600-59794000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr8:59772600-59794400	Weak transcription	Small Intestine	intestine
5	chr8:59773400-59808200	Weak transcription	Thymus	Thymus
6	chr8:59773800-59785000	Weak transcription	Dnd41	blood
7	chr8:59774000-59781000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:59774600-59789600	Weak transcription	Primary T cells from cord blood	blood
9	chr8:59777800-59780400	Enhancers	HSMM	muscle
10	chr8:59777800-59780600	Enhancers	Osteobl	bone
11	chr8:59777800-59780800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:59777800-59788200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:59777800-59795000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:59778000-59780400	Enhancers	NHDF-Ad	bronchial
15	chr8:59778200-59783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr8:59778200-59789000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr8:59778800-59780400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:59778800-59780400	Enhancers	HMEC	breast
19	chr8:59779400-59780400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr8:59779400-59780600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr8:59779400-59788800	Weak transcription	HUVEC	blood vessel
22	chr8:59779800-59780400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr8:59779800-59780400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:59779800-59780600	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr8:59779800-59780600	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr8:59779800-59781400	Strong transcription	Fetal Thymus	thymus
27	chr8:59780000-59780600	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr8:59780000-59780600	Enhancers	H9 Cell Line	embryonic stem cell
29	chr8:59780000-59780600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr8:59780000-59780600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr8:59780000-59780600	Enhancers	NHLF	lung
32	chr8:59780200-59780400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr8:59780200-59780400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:59780200-59780600	Enhancers	HSMMtube	muscle

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