Variant report

Variant	rs16924369
Chromosome Location	chr8:59891978-59891979
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10092016	1.00[CEU][hapmap]
rs10504276	1.00[CEU][hapmap]
rs11779216	1.00[CHD][hapmap]
rs11995430	1.00[CEU][hapmap]
rs11998693	1.00[CEU][hapmap]
rs16918743	1.00[CEU][hapmap]
rs16924012	1.00[CEU][hapmap]
rs16924088	1.00[CEU][hapmap]
rs16924147	1.00[CEU][hapmap]
rs16924330	1.00[CEU][hapmap];0.81[MKK][hapmap];1.00[YRI][hapmap]
rs16924339	0.81[AFR][1000 genomes]
rs16924342	1.00[CEU][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes]
rs16924346	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924373	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924484	1.00[CEU][hapmap]
rs16924486	1.00[CEU][hapmap]
rs16924489	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17301816	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2166923	1.00[CEU][hapmap]
rs41468545	1.00[CEU][hapmap]
rs7821556	1.00[CEU][hapmap]
rs9643507	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:59887000-59895000	Weak transcription	NHDF-Ad	bronchial
3	chr8:59887600-59903600	Weak transcription	Osteobl	bone
4	chr8:59888000-59893200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:59888000-59894000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:59888000-59899400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
8	chr8:59889000-59892400	ZNF genes & repeats	Dnd41	blood
9	chr8:59889000-59893800	Strong transcription	Fetal Thymus	thymus
10	chr8:59889600-59893600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:59889800-59899800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:59890200-59892800	Weak transcription	Primary T cells from cord blood	blood
14	chr8:59890400-59903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:59891200-59892800	Enhancers	Stomach Smooth Muscle	stomach
17	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:59891400-59892400	Weak transcription	Brain Germinal Matrix	brain
20	chr8:59891400-59893600	Weak transcription	Thymus	Thymus
21	chr8:59891600-59900800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:59891800-59892000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine

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