Variant report

Variant	rs11779216
Chromosome Location	chr8:59899914-59899915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10088954	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10093846	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10098381	0.84[ASW][hapmap];0.89[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109219	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10504273	0.89[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10504275	0.89[CEU][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1105608	0.96[GIH][hapmap]
rs11774625	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11777659	0.89[CEU][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs11778333	1.00[ASW][hapmap];0.88[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11784073	0.86[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12234908	1.00[MEX][hapmap]
rs13253554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13273148	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16924314	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs16924346	1.00[CHD][hapmap]
rs16924369	1.00[CHD][hapmap]
rs16924489	1.00[CHD][hapmap]
rs17241424	1.00[ASW][hapmap];0.89[CEU][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17301816	0.84[ASW][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap]
rs28681155	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6996574	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs7001520	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7821269	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7823862	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833621	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59887600-59903600	Weak transcription	Osteobl	bone
2	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
3	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:59890400-59903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:59891600-59900800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
11	chr8:59894800-59913600	Weak transcription	Small Intestine	intestine
12	chr8:59895800-59903200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:59896000-59902400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr8:59896000-59903600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr8:59896200-59903400	Weak transcription	Primary T cells from cord blood	blood
16	chr8:59896200-59903400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:59896200-59903600	Weak transcription	Right Atrium	heart
18	chr8:59896400-59903400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr8:59897800-59904400	Strong transcription	Fetal Thymus	thymus
20	chr8:59898800-59900200	Strong transcription	Thymus	Thymus
21	chr8:59898800-59900200	Strong transcription	Dnd41	blood
22	chr8:59898800-59900400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr8:59899200-59900600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr8:59899400-59900000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr8:59899400-59900400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr8:59899400-59904000	Weak transcription	Colon Smooth Muscle	Colon
27	chr8:59899600-59900400	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr8:59899800-59900000	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr8:59899800-59900000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr8:59899800-59900400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links