Variant report

Variant	rs6996574
Chromosome Location	chr8:59851341-59851342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10098381	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10504273	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10504275	1.00[CEU][hapmap]
rs10504276	0.82[JPT][hapmap]
rs1105608	0.88[CEU][hapmap]
rs11774625	0.94[EUR][1000 genomes]
rs11777659	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778333	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11779216	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs11779544	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11782466	0.89[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11783096	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11784073	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11784291	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs13252116	0.88[CEU][hapmap]
rs13253554	0.83[EUR][1000 genomes]
rs13256007	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262426	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs13273148	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16924199	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs16924207	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs16924213	0.88[CEU][hapmap]
rs16924314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17232126	0.88[CEU][hapmap]
rs17232411	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17241424	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17298221	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301816	0.88[CEU][hapmap]
rs34130829	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs402443	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6984848	0.88[CEU][hapmap]
rs6988646	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs7001520	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs71521434	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815098	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821269	0.83[EUR][1000 genomes]
rs7823862	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7833621	0.82[EUR][1000 genomes]
rs826595	0.82[JPT][hapmap]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:59831200-59860200	Weak transcription	Gastric	stomach
4	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
8	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
9	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:59840000-59854000	Strong transcription	Dnd41	blood
11	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
13	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:59842400-59851400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr8:59843000-59852600	Strong transcription	Primary T cells from cord blood	blood
16	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:59844600-59853400	Strong transcription	Fetal Thymus	thymus
18	chr8:59845200-59851600	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:59847000-59857800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:59847200-59856000	Weak transcription	NHDF-Ad	bronchial
21	chr8:59847400-59853000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:59847400-59858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:59847600-59857400	Weak transcription	HUVEC	blood vessel
24	chr8:59847600-59860400	Weak transcription	Small Intestine	intestine
25	chr8:59847800-59860600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr8:59848200-59851800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:59848400-59852200	Strong transcription	Osteobl	bone
28	chr8:59848400-59852400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:59848800-59852200	Strong transcription	Thymus	Thymus
30	chr8:59848800-59852600	Strong transcription	Primary hematopoietic stem cells	blood
31	chr8:59849000-59852400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr8:59849000-59858000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr8:59849000-59861000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr8:59849600-59852000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:59849800-59852200	Strong transcription	Stomach Smooth Muscle	stomach
36	chr8:59849800-59857800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:59850000-59852200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:59850000-59852400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr8:59850000-59858000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:59850200-59852400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:59850400-59851800	Weak transcription	Fetal Stomach	stomach
42	chr8:59850400-59852200	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr8:59850400-59852200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr8:59850400-59852600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr8:59850800-59852000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr8:59850800-59852000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr8:59850800-59860600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr8:59851200-59852000	Strong transcription	Duodenum Smooth Muscle	Duodenum

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