Variant report

Variant	rs6988646
Chromosome Location	chr8:59810877-59810878
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10098381	0.88[CEU][hapmap]
rs10504273	0.88[CEU][hapmap]
rs10504275	0.88[CEU][hapmap]
rs1105608	1.00[CEU][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs11777659	0.87[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[MKK][hapmap];0.80[YRI][hapmap];0.97[ASN][1000 genomes]
rs11778333	0.86[CEU][hapmap]
rs11779544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11782466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs11783096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11784073	0.85[CEU][hapmap]
rs11784291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252116	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13256007	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs13258467	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13259869	0.83[EUR][1000 genomes]
rs13262426	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273148	0.83[ASN][1000 genomes]
rs16924199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16924207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924213	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16924253	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16924314	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs17232126	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17232411	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.87[MKK][hapmap];0.90[YRI][hapmap];0.97[ASN][1000 genomes]
rs17241424	0.88[CEU][hapmap]
rs17298221	1.00[CHB][hapmap];0.90[YRI][hapmap];0.97[ASN][1000 genomes]
rs17301816	1.00[CEU][hapmap]
rs34130829	1.00[ASN][1000 genomes]
rs34434301	0.83[EUR][1000 genomes]
rs402443	1.00[CHB][hapmap]
rs6984848	1.00[CEU][hapmap]
rs6996574	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs71521434	0.97[ASN][1000 genomes]
rs7815098	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.80[MKK][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs7823862	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:59790800-59811200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:59791400-59811000	Weak transcription	Brain Angular Gyrus	brain
4	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
5	chr8:59794800-59811000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:59800800-59811000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:59801400-59811000	Weak transcription	Primary T cells from cord blood	blood
8	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:59804200-59811000	Weak transcription	Gastric	stomach
10	chr8:59805000-59812200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
12	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
13	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr8:59805600-59811000	Weak transcription	NHDF-Ad	bronchial
15	chr8:59806000-59814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:59808400-59811400	Enhancers	Fetal Brain Male	brain
18	chr8:59808600-59815200	Weak transcription	Osteobl	bone
19	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
20	chr8:59809800-59811800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr8:59810200-59811000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr8:59810200-59811000	Weak transcription	Fetal Thymus	thymus
23	chr8:59810200-59814800	Weak transcription	Brain Germinal Matrix	brain
24	chr8:59810400-59811600	Enhancers	Fetal Brain Female	brain
25	chr8:59810400-59813200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:59810600-59811000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:59810600-59811400	Enhancers	GM12878-XiMat	blood
28	chr8:59810600-59811400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr8:59810600-59811800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr8:59810600-59812000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr8:59810600-59812400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr8:59810600-59812400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:59810800-59811400	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr8:59810800-59811400	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr8:59810800-59811600	Enhancers	Primary B cells from cord blood	blood
36	chr8:59810800-59811600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr8:59810800-59811800	Enhancers	Primary B cells from peripheral blood	blood
38	chr8:59810800-59811800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr8:59810800-59811800	Strong transcription	Dnd41	blood
40	chr8:59810800-59811800	Enhancers	HUVEC	blood vessel

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