Variant report

Variant	rs402443
Chromosome Location	chr8:59918204-59918205
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59911633..59913501-chr8:59915823..59918576,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10094258	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs10094753	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10109969	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs10113487	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs10504274	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10504276	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10957075	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs11777659	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11779544	1.00[CHB][hapmap]
rs11782466	1.00[CHB][hapmap]
rs11783096	1.00[CHB][hapmap]
rs11784291	1.00[CHB][hapmap]
rs12675853	0.81[EUR][1000 genomes]
rs12681721	0.84[EUR][1000 genomes]
rs13256007	1.00[CHB][hapmap]
rs13262426	1.00[CHB][hapmap]
rs1448548	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs16924199	1.00[CHB][hapmap]
rs16924207	1.00[CHB][hapmap]
rs16924314	1.00[CHB][hapmap]
rs16924486	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17232411	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17298221	1.00[CHB][hapmap]
rs1868346	0.86[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1965199	0.88[EUR][1000 genomes]
rs2168409	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs310367	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs365579	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs378104	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs399142	0.85[EUR][1000 genomes]
rs403090	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs407440	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs410519	0.92[EUR][1000 genomes]
rs418520	0.96[EUR][1000 genomes]
rs439557	0.96[EUR][1000 genomes]
rs448699	0.96[EUR][1000 genomes]
rs4737528	0.89[CEU][hapmap]
rs4738746	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs4738749	0.92[EUR][1000 genomes]
rs6471758	0.81[EUR][1000 genomes]
rs6471760	0.86[CEU][hapmap]
rs6471761	0.84[EUR][1000 genomes]
rs6471763	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6471764	0.92[EUR][1000 genomes]
rs6985104	0.86[CEU][hapmap]
rs6985410	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs6988646	1.00[CHB][hapmap]
rs6992490	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs6996574	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7010342	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs7014584	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs7016545	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs7016794	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs7815098	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7841515	0.92[EUR][1000 genomes]
rs826595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643507	1.00[CHB][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59904800-59918400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr8:59905800-59921000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:59905800-59924200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:59905800-59925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr8:59906000-59924400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr8:59907600-59918400	Weak transcription	Thymus	Thymus
10	chr8:59910200-59924400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:59916400-59918800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:59916600-59918400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr8:59916800-59918400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:59916800-59918400	Weak transcription	Fetal Brain Male	brain
15	chr8:59916800-59919000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:59916800-59928400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr8:59917000-59918400	Weak transcription	Colon Smooth Muscle	Colon
18	chr8:59917200-59918400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:59917200-59918400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr8:59917200-59918400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:59917200-59918400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:59917200-59922600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr8:59917600-59918600	Weak transcription	Primary T cells from cord blood	blood
24	chr8:59918000-59918400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:59918000-59926800	Weak transcription	Fetal Stomach	stomach
26	chr8:59918200-59918600	Enhancers	Small Intestine	intestine
27	chr8:59918200-59919000	Genic enhancers	Dnd41	blood
28	chr8:59918200-59919200	Genic enhancers	Fetal Thymus	thymus
29	chr8:59918200-59920600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr8:59918200-59921200	Enhancers	HUES48 Cell Line	embryonic stem cell

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