Variant report

Variant	rs399142
Chromosome Location	chr8:59932606-59932607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10094753	1.00[AFR][1000 genomes]
rs10109969	0.81[AMR][1000 genomes]
rs10113487	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10504274	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10957075	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12675853	1.00[AFR][1000 genomes]
rs1349114	1.00[AFR][1000 genomes]
rs1448548	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1868346	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1965199	0.81[AMR][1000 genomes]
rs2168409	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs310367	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs365579	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs378104	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs402443	0.85[EUR][1000 genomes]
rs403090	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs410519	0.90[EUR][1000 genomes]
rs418520	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs420969	0.83[AMR][1000 genomes]
rs439557	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs448699	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4738746	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4738748	0.81[AFR][1000 genomes]
rs4738749	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6471758	1.00[AFR][1000 genomes]
rs6471760	1.00[AFR][1000 genomes]
rs6471763	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6471764	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6985410	1.00[AFR][1000 genomes]
rs6992490	1.00[AFR][1000 genomes]
rs7010342	1.00[AFR][1000 genomes]
rs7014584	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7016545	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7016794	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7841515	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs826419	0.83[AMR][1000 genomes]
rs826595	0.88[EUR][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59921400-59942200	Weak transcription	Gastric	stomach
2	chr8:59926800-59934000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr8:59927800-59932800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:59927800-59932800	Weak transcription	Osteobl	bone
5	chr8:59928000-59933200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:59928000-59933400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:59928200-59932800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:59928400-59933000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr8:59928400-59933200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:59928400-59934800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:59928600-59933000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:59928600-59933000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:59928600-59941200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:59928600-59941800	Weak transcription	HUVEC	blood vessel
15	chr8:59929200-59932800	Weak transcription	NHDF-Ad	bronchial
16	chr8:59929200-59933000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:59929600-59933200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:59929800-59939600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:59929800-59945000	Weak transcription	Fetal Stomach	stomach
20	chr8:59930200-59934400	Enhancers	Primary hematopoietic stem cells	blood
21	chr8:59930200-59939600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:59930200-59939600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:59930600-59932800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr8:59931000-59934000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:59931000-59934600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:59931000-59938200	Enhancers	Primary T cells from cord blood	blood
27	chr8:59931200-59932800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:59931200-59933000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr8:59931200-59933000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr8:59931200-59935000	Weak transcription	GM12878-XiMat	blood
31	chr8:59931200-59941800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr8:59931400-59932800	Weak transcription	Fetal Thymus	thymus
33	chr8:59931400-59932800	Weak transcription	Small Intestine	intestine
34	chr8:59931400-59933800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:59931400-59938000	Enhancers	Dnd41	blood
36	chr8:59931400-59945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr8:59931600-59932800	Weak transcription	Thymus	Thymus
38	chr8:59932000-59933400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
39	chr8:59932000-59935000	Weak transcription	Brain Germinal Matrix	brain
40	chr8:59932000-59955600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr8:59932400-59933600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr8:59932600-59933000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr8:59932600-59933600	Enhancers	Fetal Heart	heart
44	chr8:59932600-59934000	Enhancers	Colon Smooth Muscle	Colon

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