Variant report

Variant	rs10957075
Chromosome Location	chr8:59889075-59889076
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10094258	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10094753	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10109969	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10110007	0.82[EUR][1000 genomes]
rs10113487	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504274	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12675853	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12681721	0.92[EUR][1000 genomes]
rs1349114	0.90[AFR][1000 genomes]
rs1448548	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1868346	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1965199	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2168409	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs310367	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs365579	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs378104	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs399142	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs402443	0.89[CEU][hapmap];0.92[EUR][1000 genomes]
rs403090	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs410519	0.84[EUR][1000 genomes]
rs418520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs439557	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs448699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4737528	1.00[CEU][hapmap]
rs4738746	1.00[CEU][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4738748	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs4738749	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6471758	0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6471760	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6471761	0.92[EUR][1000 genomes]
rs6471763	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6471764	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6985104	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6985410	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6992490	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7010342	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7014584	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016545	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7016794	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826595	0.88[CEU][hapmap];0.90[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr8:59886000-59889400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:59887000-59889200	Weak transcription	Thymus	Thymus
5	chr8:59887000-59895000	Weak transcription	NHDF-Ad	bronchial
6	chr8:59887600-59891400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:59887600-59903600	Weak transcription	Osteobl	bone
8	chr8:59888000-59889200	Weak transcription	Primary T cells from cord blood	blood
9	chr8:59888000-59889200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr8:59888000-59890000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:59888000-59893200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:59888000-59894000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr8:59888000-59899400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
15	chr8:59888200-59889200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:59888600-59889200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:59888600-59891600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
18	chr8:59888800-59891200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr8:59888800-59891600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:59889000-59892400	ZNF genes & repeats	Dnd41	blood
21	chr8:59889000-59893800	Strong transcription	Fetal Thymus	thymus

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