Variant report

Variant	rs10094258
Chromosome Location	chr8:59841802-59841803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59838431..59840418-chr8:59841097..59843754,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10094753	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10109969	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10110007	0.90[EUR][1000 genomes]
rs10113487	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10504274	0.87[EUR][1000 genomes]
rs10957075	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12675853	0.94[EUR][1000 genomes]
rs12681721	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1448548	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16924227	0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs1868346	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1965199	0.88[EUR][1000 genomes]
rs2168409	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs310367	1.00[CEU][hapmap]
rs365579	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs378104	0.87[EUR][1000 genomes]
rs402443	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs403090	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs418520	0.87[EUR][1000 genomes]
rs439557	0.87[EUR][1000 genomes]
rs448699	0.87[EUR][1000 genomes]
rs4737528	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs4738746	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4738749	0.92[EUR][1000 genomes]
rs6471758	0.94[EUR][1000 genomes]
rs6471759	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6471760	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs6471761	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6471763	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6471764	0.92[EUR][1000 genomes]
rs6985104	1.00[CEU][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6985410	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs6992490	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7010342	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7014584	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7016545	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7016794	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7841515	0.92[EUR][1000 genomes]
rs826595	0.86[CEU][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59827400-59843000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:59831200-59860200	Weak transcription	Gastric	stomach
11	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr8:59837800-59845800	Weak transcription	HUVEC	blood vessel
16	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
17	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
18	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:59840000-59849600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr8:59840000-59854000	Strong transcription	Dnd41	blood
21	chr8:59840200-59845200	Weak transcription	Osteobl	bone
22	chr8:59840200-59848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr8:59840400-59844200	Weak transcription	Colon Smooth Muscle	Colon
24	chr8:59840400-59850400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:59840400-59850400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr8:59840600-59849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr8:59840800-59850200	Weak transcription	Fetal Stomach	stomach
28	chr8:59840800-59850400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:59841000-59842800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr8:59841000-59843000	Weak transcription	Primary T cells from cord blood	blood
31	chr8:59841000-59843000	Weak transcription	Fetal Thymus	thymus
32	chr8:59841000-59845800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:59841000-59848200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:59841000-59848400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:59841000-59848800	Weak transcription	Thymus	Thymus
36	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
38	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr8:59841800-59842400	Enhancers	Duodenum Mucosa	Duodenum

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