Variant report

Variant	rs10094753
Chromosome Location	chr8:59812113-59812114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59801544..59803959-chr8:59811921..59813443,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10094258	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10109969	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10110007	0.92[EUR][1000 genomes]
rs10113487	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10504274	0.85[EUR][1000 genomes]
rs10957075	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12675853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12681721	0.94[EUR][1000 genomes]
rs1349114	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1448548	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1868346	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1965199	0.85[EUR][1000 genomes]
rs2168409	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs310367	1.00[CEU][hapmap]
rs365579	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs378104	0.85[EUR][1000 genomes]
rs399142	1.00[AFR][1000 genomes]
rs402443	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs403090	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs418520	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs439557	0.85[EUR][1000 genomes]
rs448699	0.90[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4737528	1.00[CEU][hapmap]
rs4738746	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4738748	0.81[AFR][1000 genomes]
rs4738749	0.89[EUR][1000 genomes]
rs6471758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6471759	0.87[EUR][1000 genomes]
rs6471760	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6471761	0.94[EUR][1000 genomes]
rs6471763	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6471764	0.89[EUR][1000 genomes]
rs6985104	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs6985410	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6992490	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010342	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7014584	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7016545	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7016794	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7841515	0.89[EUR][1000 genomes]
rs826595	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:59805000-59812200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
5	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
6	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:59806000-59814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:59808600-59815200	Weak transcription	Osteobl	bone
10	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
11	chr8:59810200-59814800	Weak transcription	Brain Germinal Matrix	brain
12	chr8:59810400-59813200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:59810600-59812400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:59810600-59812400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:59811000-59812600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr8:59811400-59813400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr8:59811400-59813800	Weak transcription	Fetal Brain Male	brain
18	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr8:59811600-59812800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr8:59811600-59813800	Weak transcription	Fetal Brain Female	brain
21	chr8:59811600-59815200	Weak transcription	Fetal Lung	lung
22	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr8:59811800-59813600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr8:59811800-59814000	Weak transcription	Dnd41	blood
25	chr8:59811800-59815400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr8:59811800-59815600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr8:59811800-59815600	Weak transcription	HUVEC	blood vessel
28	chr8:59811800-59815600	Weak transcription	NHDF-Ad	bronchial
29	chr8:59811800-59816800	Weak transcription	Fetal Thymus	thymus
30	chr8:59811800-59817000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
32	chr8:59812000-59818000	Weak transcription	Primary T cells from cord blood	blood
33	chr8:59812000-59819800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:59812000-59823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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