Variant report

Variant	rs826595
Chromosome Location	chr8:59921413-59921414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10094258	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs10094753	0.88[CEU][hapmap]
rs10109969	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs10113487	0.88[CEU][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs10504274	1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs10504276	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10957075	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs11777659	0.82[JPT][hapmap]
rs12681721	0.82[EUR][1000 genomes]
rs13256007	0.82[JPT][hapmap]
rs1448548	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs16924314	0.82[JPT][hapmap]
rs16924486	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs17232411	0.82[JPT][hapmap]
rs17298221	0.82[JPT][hapmap]
rs1868346	0.88[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs1965199	0.86[EUR][1000 genomes]
rs2168409	0.88[CEU][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs310367	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs365579	0.88[CEU][hapmap];0.94[EUR][1000 genomes]
rs378104	0.94[EUR][1000 genomes]
rs399142	0.88[EUR][1000 genomes]
rs402443	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs403090	0.88[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs407440	1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs410519	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs418520	0.94[EUR][1000 genomes]
rs439557	0.94[EUR][1000 genomes]
rs448699	0.94[EUR][1000 genomes]
rs4737528	0.88[CEU][hapmap]
rs4738746	0.87[CEU][hapmap];0.90[EUR][1000 genomes]
rs4738749	0.90[EUR][1000 genomes]
rs6471760	0.88[CEU][hapmap];0.94[TSI][hapmap]
rs6471761	0.82[EUR][1000 genomes]
rs6471763	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs6471764	0.90[EUR][1000 genomes]
rs6985104	0.88[CEU][hapmap];0.94[TSI][hapmap]
rs6985410	0.88[CEU][hapmap]
rs6992490	0.88[CEU][hapmap]
rs6996574	0.82[JPT][hapmap]
rs7010342	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7014584	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs7016545	0.88[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7016794	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs7815098	0.82[JPT][hapmap]
rs7841515	0.90[EUR][1000 genomes]
rs9643507	1.00[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:59905800-59924200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:59905800-59925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr8:59906000-59924400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:59910200-59924400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:59916800-59928400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr8:59917200-59922600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr8:59918000-59926800	Weak transcription	Fetal Stomach	stomach
10	chr8:59918600-59924800	Weak transcription	Small Intestine	intestine
11	chr8:59918800-59921800	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:59918800-59922600	Weak transcription	Fetal Brain Male	brain
13	chr8:59919000-59923000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr8:59919000-59927000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:59919000-59927000	Weak transcription	Osteobl	bone
16	chr8:59919000-59927800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr8:59919400-59922600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:59919400-59927200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:59919600-59923800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:59919800-59921800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:59919800-59922600	Weak transcription	Primary T cells from cord blood	blood
22	chr8:59919800-59923400	Weak transcription	Thymus	Thymus
23	chr8:59919800-59924200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr8:59919800-59925800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:59919800-59927000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:59919800-59927400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr8:59919800-59927600	Weak transcription	Brain Anterior Caudate	brain
28	chr8:59920000-59923000	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:59920000-59925000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr8:59920600-59924000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr8:59920600-59924000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr8:59920600-59929400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr8:59921000-59922000	Genic enhancers	Dnd41	blood
34	chr8:59921000-59925200	Weak transcription	HUVEC	blood vessel
35	chr8:59921200-59924600	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr8:59921400-59923000	Weak transcription	Fetal Thymus	thymus
37	chr8:59921400-59923200	Weak transcription	Brain Germinal Matrix	brain
38	chr8:59921400-59923600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr8:59921400-59924400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr8:59921400-59929000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr8:59921400-59942200	Weak transcription	Gastric	stomach

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