Variant report

Variant	rs365579
Chromosome Location	chr8:59913674-59913675
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59912578..59914406-chr8:59918956..59920784,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10094258	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10094753	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs10109969	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10113487	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10504274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10957075	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12675853	0.85[EUR][1000 genomes]
rs12681721	0.87[EUR][1000 genomes]
rs1448548	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1868346	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1965199	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2168409	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs310367	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs378104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs399142	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs402443	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs403090	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs410519	0.88[EUR][1000 genomes]
rs418520	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs439557	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs448699	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4737528	1.00[CEU][hapmap]
rs4738746	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4738749	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6471758	0.85[EUR][1000 genomes]
rs6471760	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6471761	0.87[EUR][1000 genomes]
rs6471763	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6471764	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6985104	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6985410	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs6992490	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7010342	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7014584	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7016545	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7016794	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7841515	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs826595	0.88[CEU][hapmap];0.94[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:59904800-59918400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:59905800-59921000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:59905800-59924200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:59905800-59925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr8:59906000-59924400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:59907200-59914600	Weak transcription	Fetal Thymus	thymus
12	chr8:59907600-59918400	Weak transcription	Thymus	Thymus
13	chr8:59909200-59916000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:59910200-59924400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr8:59913600-59914000	Enhancers	Primary T cells from cord blood	blood
16	chr8:59913600-59914000	Enhancers	Small Intestine	intestine
17	chr8:59913600-59914600	Enhancers	Dnd41	blood

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