Variant report

Variant	rs7016545
Chromosome Location	chr8:59865138-59865139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10094258	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10094753	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10109969	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110007	0.84[EUR][1000 genomes]
rs10113487	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[TSI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10504274	1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10957075	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12675853	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12681721	0.94[EUR][1000 genomes]
rs1349114	1.00[AFR][1000 genomes]
rs1448548	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924156	1.00[ASW][hapmap]
rs1868346	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1965199	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2168409	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2914087	1.00[ASW][hapmap]
rs310367	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs365579	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs378104	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs399142	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs402443	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs403090	1.00[CEU][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs410519	0.82[EUR][1000 genomes]
rs418520	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs439557	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs448699	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4737528	1.00[CEU][hapmap]
rs4738746	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4738748	0.81[AFR][1000 genomes]
rs4738749	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6471758	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6471760	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[MKK][hapmap];0.94[TSI][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6471761	0.94[EUR][1000 genomes]
rs6471763	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6471764	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6985104	1.00[CEU][hapmap];0.94[TSI][hapmap];0.90[EUR][1000 genomes]
rs6985410	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6992490	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7010342	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7014584	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7016794	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7841515	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs826595	0.88[CEU][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7016545	SNORD78	trans	lymphoblastoid	seeQTL

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
3	chr8:59852000-59871200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:59852200-59866800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:59852200-59866800	Weak transcription	Thymus	Thymus
8	chr8:59852200-59871800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr8:59857600-59865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:59858200-59866800	Weak transcription	Dnd41	blood
15	chr8:59858200-59870400	Weak transcription	Brain Germinal Matrix	brain
16	chr8:59858200-59872600	Weak transcription	Fetal Kidney	kidney
17	chr8:59859200-59865400	Weak transcription	Fetal Lung	lung
18	chr8:59859200-59866600	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:59859200-59867000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:59859200-59870800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:59859400-59865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:59859400-59866000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr8:59860400-59865800	Weak transcription	Osteobl	bone
24	chr8:59860400-59866600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:59860400-59871200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr8:59860600-59865200	Weak transcription	NHDF-Ad	bronchial
27	chr8:59860800-59865400	Weak transcription	Small Intestine	intestine
28	chr8:59860800-59866000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr8:59860800-59866000	Weak transcription	Colon Smooth Muscle	Colon
30	chr8:59860800-59866800	Weak transcription	Fetal Thymus	thymus
31	chr8:59861200-59870800	Weak transcription	Fetal Stomach	stomach
32	chr8:59864600-59865600	Enhancers	Primary T cells from cord blood	blood
33	chr8:59864600-59870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr8:59864800-59865200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr8:59865000-59866200	Enhancers	Fetal Brain Male	brain
36	chr8:59865000-59867200	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr8:59865000-59871200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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