Variant report

Variant	rs6992490
Chromosome Location	chr8:59824037-59824038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10094258	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs10094753	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109969	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10110007	0.92[EUR][1000 genomes]
rs10113487	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10504274	0.85[EUR][1000 genomes]
rs10957075	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12675853	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12681721	0.94[EUR][1000 genomes]
rs1349114	1.00[AFR][1000 genomes]
rs1448548	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1868346	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1965199	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2168409	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs310367	1.00[CEU][hapmap];0.81[AMR][1000 genomes]
rs365579	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs378104	0.85[EUR][1000 genomes]
rs399142	1.00[AFR][1000 genomes]
rs402443	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs403090	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs418520	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs439557	0.85[EUR][1000 genomes]
rs448699	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4737528	1.00[CEU][hapmap]
rs4738746	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4738748	0.81[AFR][1000 genomes]
rs4738749	0.89[EUR][1000 genomes]
rs6471758	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6471759	0.87[EUR][1000 genomes]
rs6471760	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6471761	0.94[EUR][1000 genomes]
rs6471763	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6471764	0.89[EUR][1000 genomes]
rs6985104	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs6985410	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7010342	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7014584	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7016545	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7016794	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7841515	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs826595	0.88[CEU][hapmap]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
4	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:59816000-59825800	Weak transcription	Fetal Kidney	kidney
8	chr8:59816000-59840000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:59816200-59839800	Weak transcription	Fetal Stomach	stomach
10	chr8:59816400-59840200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr8:59818800-59826400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr8:59821000-59838400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:59821200-59835200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr8:59821400-59833400	Weak transcription	Dnd41	blood
17	chr8:59821800-59824200	Weak transcription	Fetal Thymus	thymus
18	chr8:59821800-59835200	Weak transcription	Primary T cells from cord blood	blood
19	chr8:59822800-59825200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr8:59823400-59824200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr8:59823400-59824200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:59823400-59824200	Enhancers	Osteobl	bone
23	chr8:59823800-59824200	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr8:59823800-59826600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr8:59824000-59824200	Enhancers	Brain Anterior Caudate	brain
27	chr8:59824000-59824200	Enhancers	Hela-S3	cervix
28	chr8:59824000-59826600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr8:59824000-59840000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links