Variant report

Variant	rs4738749
Chromosome Location	chr8:59906474-59906475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr8:59906261-59906709	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000254048	TF binding region

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10094258	0.92[EUR][1000 genomes]
rs10094753	0.89[EUR][1000 genomes]
rs10109969	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10110007	0.82[EUR][1000 genomes]
rs10113487	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504274	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10957075	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12675853	0.89[EUR][1000 genomes]
rs12681721	0.92[EUR][1000 genomes]
rs1448548	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1868346	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1965199	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2168409	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs310367	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs365579	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs378104	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs399142	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs402443	0.92[EUR][1000 genomes]
rs403090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs410519	0.84[EUR][1000 genomes]
rs418520	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs439557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs448699	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4738746	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4738748	0.81[AMR][1000 genomes]
rs6471758	0.89[EUR][1000 genomes]
rs6471760	0.86[EUR][1000 genomes]
rs6471761	0.92[EUR][1000 genomes]
rs6471763	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6471764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6985104	0.87[EUR][1000 genomes]
rs6985410	0.89[EUR][1000 genomes]
rs6992490	0.89[EUR][1000 genomes]
rs7010342	0.94[EUR][1000 genomes]
rs7014584	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7016545	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7016794	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7841515	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs826595	0.90[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59894800-59913600	Weak transcription	Small Intestine	intestine
5	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:59904400-59907600	Strong transcription	Thymus	Thymus
8	chr8:59904800-59906600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:59904800-59907400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:59904800-59908400	Weak transcription	Fetal Brain Male	brain
11	chr8:59904800-59918400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:59905000-59906600	Enhancers	Stomach Smooth Muscle	stomach
13	chr8:59905800-59907200	Strong transcription	Fetal Thymus	thymus
14	chr8:59905800-59907600	Strong transcription	Dnd41	blood
15	chr8:59905800-59908800	Weak transcription	Primary T cells from cord blood	blood
16	chr8:59905800-59921000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr8:59905800-59924200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr8:59905800-59925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr8:59906000-59924400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr8:59906400-59906800	Active TSS	Pancreatic Islets	Pancreatic Islet

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