Variant report

Variant	rs13256007
Chromosome Location	chr8:59840631-59840632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10098381	0.89[CEU][hapmap]
rs10504273	0.89[CEU][hapmap]
rs10504275	0.89[CEU][hapmap]
rs11774625	0.84[EUR][1000 genomes]
rs11777659	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778333	0.88[CEU][hapmap]
rs11779544	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11782466	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11783096	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs11784073	0.86[CEU][hapmap]
rs11784291	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs13262426	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs13273148	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16924199	1.00[CHB][hapmap];0.94[ASN][1000 genomes]
rs16924207	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs16924314	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17232411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17241424	0.89[CEU][hapmap]
rs17298221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34130829	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs402443	1.00[CHB][hapmap]
rs6988646	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs6996574	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001520	0.84[EUR][1000 genomes]
rs71521434	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823862	0.88[CEU][hapmap]
rs826595	0.82[JPT][hapmap]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59827400-59843000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:59831200-59860200	Weak transcription	Gastric	stomach
11	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:59835200-59841000	Strong transcription	Primary T cells from cord blood	blood
14	chr8:59835400-59841000	Strong transcription	Fetal Thymus	thymus
15	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr8:59837800-59845800	Weak transcription	HUVEC	blood vessel
18	chr8:59838600-59841000	Strong transcription	Thymus	Thymus
19	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
20	chr8:59839400-59841000	Strong transcription	Duodenum Mucosa	Duodenum
21	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
22	chr8:59839600-59841000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr8:59839800-59840800	Strong transcription	Fetal Stomach	stomach
25	chr8:59840000-59841000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:59840000-59841000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:59840000-59841000	Strong transcription	Fetal Intestine Small	intestine
28	chr8:59840000-59841000	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr8:59840000-59849600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr8:59840000-59854000	Strong transcription	Dnd41	blood
31	chr8:59840200-59840800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:59840200-59841000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:59840200-59845200	Weak transcription	Osteobl	bone
34	chr8:59840200-59848200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr8:59840400-59844200	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:59840400-59850400	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr8:59840400-59850400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr8:59840600-59840800	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr8:59840600-59849000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links