Variant report

Variant	rs10504275
Chromosome Location	chr8:59916056-59916057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59911633..59913501-chr8:59915823..59918576,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10088954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10093846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10098381	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10109219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10504273	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1105608	0.88[CEU][hapmap]
rs11774625	0.84[EUR][1000 genomes]
rs11777659	1.00[CEU][hapmap]
rs11778333	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11779216	0.89[CEU][hapmap];0.88[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11779544	0.88[CEU][hapmap]
rs11782466	0.89[CEU][hapmap]
rs11783096	0.88[CEU][hapmap]
rs11784073	1.00[CEU][hapmap];0.89[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11784291	0.88[CEU][hapmap]
rs13252116	0.88[CEU][hapmap]
rs13253554	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13256007	0.89[CEU][hapmap]
rs13262426	0.87[CEU][hapmap]
rs13273148	0.84[EUR][1000 genomes]
rs16924199	0.88[CEU][hapmap]
rs16924207	0.88[CEU][hapmap]
rs16924213	0.88[CEU][hapmap]
rs16924314	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17232126	0.88[CEU][hapmap]
rs17232411	0.89[CEU][hapmap]
rs17241424	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17298221	0.89[CEU][hapmap]
rs17301816	0.88[CEU][hapmap]
rs28681155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6984848	0.88[CEU][hapmap]
rs6988646	0.88[CEU][hapmap]
rs6996574	1.00[CEU][hapmap]
rs7001520	0.84[EUR][1000 genomes]
rs7815098	0.89[CEU][hapmap]
rs7821269	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7823862	1.00[CEU][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7833621	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:59904800-59918400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:59905800-59921000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:59905800-59924200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr8:59905800-59925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr8:59906000-59924400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:59907600-59918400	Weak transcription	Thymus	Thymus
12	chr8:59910200-59924400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:59914000-59916600	Weak transcription	Primary T cells from cord blood	blood
14	chr8:59914000-59918200	Weak transcription	Small Intestine	intestine
15	chr8:59914600-59916800	Weak transcription	Dnd41	blood
16	chr8:59915000-59918200	Weak transcription	Fetal Thymus	thymus
17	chr8:59915800-59916400	Enhancers	H1 Cell Line	embryonic stem cell
18	chr8:59916000-59917000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr8:59916000-59917200	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links