Variant report

Variant	rs17301816
Chromosome Location	chr8:59923894-59923895
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59923110..59925416-chr8:59988783..59990838,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10098381	0.88[CEU][hapmap];0.95[GIH][hapmap]
rs10504273	0.88[CEU][hapmap]
rs10504275	0.88[CEU][hapmap]
rs1105608	1.00[CEU][hapmap];0.95[GIH][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap]
rs11777659	0.88[CEU][hapmap]
rs11778333	0.86[CEU][hapmap];0.91[GIH][hapmap]
rs11779216	0.84[ASW][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap]
rs11779544	1.00[CEU][hapmap]
rs11783096	1.00[CEU][hapmap]
rs11783223	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11784073	0.85[CEU][hapmap]
rs11784291	1.00[CEU][hapmap]
rs13252116	1.00[CEU][hapmap]
rs13262426	1.00[CEU][hapmap]
rs13262617	0.85[YRI][hapmap]
rs16924199	1.00[CEU][hapmap]
rs16924207	1.00[CEU][hapmap]
rs16924213	1.00[CEU][hapmap]
rs16924314	0.88[CEU][hapmap]
rs16924346	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16924369	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16924373	1.00[ASN][1000 genomes]
rs16924489	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs17232126	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs17241424	0.88[CEU][hapmap];0.95[GIH][hapmap]
rs17301580	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6984848	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6988646	1.00[CEU][hapmap]
rs6996574	0.88[CEU][hapmap]
rs7823862	1.00[CEU][hapmap]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:59905800-59924200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:59905800-59925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr8:59906000-59924400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:59910200-59924400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:59916800-59928400	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr8:59918000-59926800	Weak transcription	Fetal Stomach	stomach
9	chr8:59918600-59924800	Weak transcription	Small Intestine	intestine
10	chr8:59919000-59927000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:59919000-59927000	Weak transcription	Osteobl	bone
12	chr8:59919000-59927800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr8:59919400-59927200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr8:59919800-59924200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:59919800-59925800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:59919800-59927000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:59919800-59927400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr8:59919800-59927600	Weak transcription	Brain Anterior Caudate	brain
19	chr8:59920000-59925000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:59920600-59924000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr8:59920600-59924000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr8:59920600-59929400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr8:59921000-59925200	Weak transcription	HUVEC	blood vessel
24	chr8:59921200-59924600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:59921400-59924400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr8:59921400-59929000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:59921400-59942200	Weak transcription	Gastric	stomach
28	chr8:59922400-59924400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:59922400-59924800	Genic enhancers	Dnd41	blood
30	chr8:59922600-59927600	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr8:59922600-59929400	Enhancers	Primary T cells from cord blood	blood
32	chr8:59923000-59924000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr8:59923000-59924400	Enhancers	Stomach Smooth Muscle	stomach
34	chr8:59923000-59928000	Enhancers	Colon Smooth Muscle	Colon
35	chr8:59923000-59928000	Enhancers	Fetal Thymus	thymus
36	chr8:59923200-59924800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr8:59923400-59924400	Enhancers	Fetal Heart	heart
38	chr8:59923400-59925200	Enhancers	Thymus	Thymus
39	chr8:59923600-59925800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr8:59923600-59926400	Weak transcription	Brain Germinal Matrix	brain
41	chr8:59923800-59924000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:59923800-59924600	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr8:59923800-59924600	Enhancers	Pancreas	Pancrea
44	chr8:59923800-59925000	Enhancers	H9 Cell Line	embryonic stem cell

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