Variant report

Variant	rs7823862
Chromosome Location	chr8:59903271-59903272
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10088954	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10093846	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10098381	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109219	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10504273	1.00[CEU][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10504275	1.00[CEU][hapmap];0.90[YRI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1105608	1.00[CEU][hapmap]
rs11774625	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11777659	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11778333	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11779216	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11779544	1.00[CEU][hapmap]
rs11782466	0.88[CEU][hapmap]
rs11783096	1.00[CEU][hapmap]
rs11784073	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11784291	1.00[CEU][hapmap]
rs13252116	1.00[CEU][hapmap]
rs13253554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13256007	0.88[CEU][hapmap]
rs13262426	1.00[CEU][hapmap]
rs13273148	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16924199	1.00[CEU][hapmap]
rs16924207	1.00[CEU][hapmap]
rs16924213	1.00[CEU][hapmap]
rs16924314	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17232126	1.00[CEU][hapmap]
rs17232411	0.88[CEU][hapmap]
rs17241424	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17298221	0.88[CEU][hapmap]
rs17301816	1.00[CEU][hapmap]
rs28681155	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6984848	1.00[CEU][hapmap]
rs6988646	1.00[CEU][hapmap]
rs6996574	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7001520	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7815098	0.88[CEU][hapmap]
rs7821269	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833621	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59887600-59903600	Weak transcription	Osteobl	bone
2	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
3	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
9	chr8:59894800-59913600	Weak transcription	Small Intestine	intestine
10	chr8:59896000-59903600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:59896200-59903400	Weak transcription	Primary T cells from cord blood	blood
12	chr8:59896200-59903400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr8:59896200-59903600	Weak transcription	Right Atrium	heart
14	chr8:59896400-59903400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:59897800-59904400	Strong transcription	Fetal Thymus	thymus
16	chr8:59899400-59904000	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:59900000-59904000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:59900600-59903800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr8:59900600-59904400	Weak transcription	Thymus	Thymus
21	chr8:59901600-59903600	Weak transcription	Fetal Lung	lung
22	chr8:59902200-59903600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:59902400-59903600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr8:59902400-59903800	Enhancers	Primary T cells fromperipheralblood	blood
26	chr8:59902400-59904000	Strong transcription	Dnd41	blood
27	chr8:59902400-59904200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:59903200-59903400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:59903200-59903400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr8:59903200-59903400	Enhancers	Primary T killer memory cells from peripheral blood	blood
31	chr8:59903200-59903400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:59903200-59903400	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr8:59903200-59903400	Enhancers	Gastric	stomach
34	chr8:59903200-59903400	ZNF genes & repeats	Lung	lung
35	chr8:59903200-59903600	Enhancers	Stomach Smooth Muscle	stomach
36	chr8:59903200-59903800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr8:59903200-59903800	Enhancers	NHDF-Ad	bronchial
38	chr8:59903200-59904000	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr8:59903200-59904000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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