Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:59907463-59907575	GM12878	blood:	n/a	n/a
2	EP300	chr8:59907134-59909150	SK-N-SH	brain:	n/a	chr8:59907458-59907467 chr8:59908001-59908015 chr8:59909117-59909131 chr8:59907824-59907838 chr8:59908231-59908241

Variant related genes	Relation type
ENSG00000254048	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10088954	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10093846	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10098381	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10109219	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10504273	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10504275	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11774625	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11777659	0.83[EUR][1000 genomes]
rs11778333	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11779216	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11784073	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13253554	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13273148	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16924314	0.87[EUR][1000 genomes]
rs17241424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28681155	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6996574	0.83[EUR][1000 genomes]
rs7001520	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7823862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7833621	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:59894800-59913600	Weak transcription	Small Intestine	intestine
5	chr8:59900400-59919000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:59902200-59924600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr8:59904400-59907600	Strong transcription	Thymus	Thymus
8	chr8:59904800-59908400	Weak transcription	Fetal Brain Male	brain
9	chr8:59904800-59918400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:59905800-59907600	Strong transcription	Dnd41	blood
11	chr8:59905800-59908800	Weak transcription	Primary T cells from cord blood	blood
12	chr8:59905800-59921000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr8:59905800-59924200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:59905800-59925400	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr8:59906000-59924400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr8:59907200-59914600	Weak transcription	Fetal Thymus	thymus
17	chr8:59907400-59909200	Enhancers	Pancreatic Islets	Pancreatic Islet

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