Variant report

Variant	rs11774625
Chromosome Location	chr8:59880604-59880605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10088954	0.84[EUR][1000 genomes]
rs10093846	0.84[EUR][1000 genomes]
rs10098381	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10109219	0.84[EUR][1000 genomes]
rs10504273	0.86[EUR][1000 genomes]
rs10504275	0.84[EUR][1000 genomes]
rs11777659	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11778333	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11779216	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11782466	0.81[EUR][1000 genomes]
rs11784073	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13253554	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13256007	0.84[EUR][1000 genomes]
rs13273148	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924314	0.98[EUR][1000 genomes]
rs17232411	0.84[EUR][1000 genomes]
rs17241424	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17298221	0.82[EUR][1000 genomes]
rs28681155	0.84[EUR][1000 genomes]
rs6996574	0.94[EUR][1000 genomes]
rs7001520	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71521434	0.83[EUR][1000 genomes]
rs7815098	0.84[EUR][1000 genomes]
rs7821269	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7823862	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7833621	0.87[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
4	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
6	chr8:59872600-59882400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:59873000-59883000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr8:59874800-59887600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr8:59876400-59886200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:59876400-59886400	Weak transcription	Thymus	Thymus
14	chr8:59877200-59887600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:59877600-59887600	Weak transcription	Gastric	stomach
16	chr8:59878800-59881000	Weak transcription	HSMM	muscle
17	chr8:59878800-59883800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr8:59879000-59881000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:59879000-59884800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:59879000-59887600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:59879000-59887800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:59879000-59887800	Weak transcription	Dnd41	blood
23	chr8:59879200-59881000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr8:59879200-59882000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:59879200-59883000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr8:59879200-59883600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr8:59879200-59886600	Weak transcription	Osteobl	bone
28	chr8:59879200-59887600	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr8:59879200-59887600	Weak transcription	Fetal Stomach	stomach
30	chr8:59880200-59881000	Enhancers	GM12878-XiMat	blood
31	chr8:59880400-59881400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr8:59880400-59883600	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr8:59880400-59886400	Weak transcription	Fetal Thymus	thymus
34	chr8:59880600-59887600	Weak transcription	Pancreas	Pancrea

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