Variant report

Variant	rs71521434
Chromosome Location	chr8:59833357-59833358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:12462887..12464387-chr8:59832350..59833853,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11774625	0.83[EUR][1000 genomes]
rs11777659	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779544	0.94[ASN][1000 genomes]
rs11782466	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11783096	0.94[ASN][1000 genomes]
rs11784291	0.97[ASN][1000 genomes]
rs13256007	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13262426	0.97[ASN][1000 genomes]
rs13273148	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16924199	0.94[ASN][1000 genomes]
rs16924207	0.97[ASN][1000 genomes]
rs16924314	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17232411	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17298221	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34130829	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6988646	0.97[ASN][1000 genomes]
rs6996574	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001520	0.83[EUR][1000 genomes]
rs7815098	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3376826	chr8:59827148-59833846	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59816000-59840000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:59816200-59839800	Weak transcription	Fetal Stomach	stomach
6	chr8:59816400-59840200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:59821000-59838400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:59821200-59835200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:59821400-59833400	Weak transcription	Dnd41	blood
12	chr8:59821800-59835200	Weak transcription	Primary T cells from cord blood	blood
13	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:59824000-59840000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:59827000-59835400	Weak transcription	Thymus	Thymus
18	chr8:59827000-59836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr8:59827200-59835400	Weak transcription	Fetal Thymus	thymus
20	chr8:59827200-59839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:59827200-59840000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:59827400-59843000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:59831200-59860200	Weak transcription	Gastric	stomach
24	chr8:59832200-59839400	Weak transcription	Duodenum Mucosa	Duodenum

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