Variant report

Variant	rs13273148
Chromosome Location	chr8:59874147-59874148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10088954	0.84[EUR][1000 genomes]
rs10093846	0.84[EUR][1000 genomes]
rs10098381	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10109219	0.84[EUR][1000 genomes]
rs10504273	0.86[EUR][1000 genomes]
rs10504275	0.84[EUR][1000 genomes]
rs11774625	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11777659	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11778333	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11779216	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11779544	0.81[ASN][1000 genomes]
rs11782466	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11783096	0.81[ASN][1000 genomes]
rs11784073	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11784291	0.83[ASN][1000 genomes]
rs13253554	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13256007	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13262426	0.83[ASN][1000 genomes]
rs16924199	0.81[ASN][1000 genomes]
rs16924207	0.83[ASN][1000 genomes]
rs16924314	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17232411	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17241424	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17298221	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28681155	0.84[EUR][1000 genomes]
rs34130829	0.83[ASN][1000 genomes]
rs6988646	0.83[ASN][1000 genomes]
rs6996574	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7001520	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71521434	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7815098	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7821269	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7823862	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7833621	0.87[EUR][1000 genomes]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
2	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:59867200-59878600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59868000-59875200	Weak transcription	Thymus	Thymus
10	chr8:59868000-59880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
12	chr8:59869800-59876800	Weak transcription	Gastric	stomach
13	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:59871400-59877200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:59871600-59875000	Weak transcription	Dnd41	blood
16	chr8:59871600-59878000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:59871600-59878000	Weak transcription	HSMM	muscle
18	chr8:59871800-59878600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:59871800-59878600	Weak transcription	NHLF	lung
20	chr8:59872400-59878600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr8:59872400-59878600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
23	chr8:59872600-59878600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr8:59872600-59880200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:59872600-59882400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:59872800-59874800	Enhancers	Fetal Brain Male	brain
27	chr8:59872800-59875400	Weak transcription	Fetal Thymus	thymus
28	chr8:59872800-59876200	Weak transcription	Stomach Mucosa	stomach
29	chr8:59872800-59876400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr8:59872800-59877000	Weak transcription	Small Intestine	intestine
31	chr8:59872800-59878600	Weak transcription	Fetal Stomach	stomach
32	chr8:59872800-59880000	Weak transcription	Pancreas	Pancrea
33	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr8:59873000-59883000	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr8:59873600-59878000	Weak transcription	Osteobl	bone
36	chr8:59873600-59878400	Weak transcription	Fetal Heart	heart
37	chr8:59873600-59878600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr8:59874000-59876600	Enhancers	Primary T cells fromperipheralblood	blood
41	chr8:59874000-59878600	Weak transcription	NHDF-Ad	bronchial

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