Variant report

Variant	rs13262426
Chromosome Location	chr8:59815172-59815173
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10098381	0.86[CEU][hapmap]
rs10504273	0.87[CEU][hapmap]
rs10504275	0.87[CEU][hapmap]
rs1105608	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11777659	0.86[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.97[ASN][1000 genomes]
rs11778333	0.85[CEU][hapmap]
rs11779544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11782466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs11783096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11784073	0.85[CEU][hapmap]
rs11784291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13252116	1.00[CEU][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13256007	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs13258467	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13259869	0.83[EUR][1000 genomes]
rs13273148	0.83[ASN][1000 genomes]
rs16924199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16924207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924213	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16924253	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16924314	0.87[CEU][hapmap];1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs17232126	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17232411	1.00[CHB][hapmap];0.90[YRI][hapmap];0.97[ASN][1000 genomes]
rs17241424	0.86[CEU][hapmap]
rs17298221	1.00[CHB][hapmap];0.92[YRI][hapmap];0.97[ASN][1000 genomes]
rs17301816	1.00[CEU][hapmap]
rs34130829	1.00[ASN][1000 genomes]
rs34434301	0.83[EUR][1000 genomes]
rs402443	1.00[CHB][hapmap]
rs6984848	1.00[CEU][hapmap]
rs6988646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996574	0.87[CEU][hapmap];1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs71521434	0.97[ASN][1000 genomes]
rs7815098	1.00[CHB][hapmap];0.81[YRI][hapmap];0.97[ASN][1000 genomes]
rs7823862	1.00[CEU][hapmap]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
2	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
4	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
5	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon
7	chr8:59808600-59815200	Weak transcription	Osteobl	bone
8	chr8:59809000-59826400	Weak transcription	Thymus	Thymus
9	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr8:59811600-59815200	Weak transcription	Fetal Lung	lung
11	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr8:59811800-59815400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr8:59811800-59815600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:59811800-59815600	Weak transcription	HUVEC	blood vessel
15	chr8:59811800-59815600	Weak transcription	NHDF-Ad	bronchial
16	chr8:59811800-59816800	Weak transcription	Fetal Thymus	thymus
17	chr8:59811800-59817000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:59812000-59818000	Weak transcription	Primary T cells from cord blood	blood
20	chr8:59812000-59819800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr8:59812000-59823200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr8:59812800-59815600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:59813400-59815200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr8:59813600-59817400	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:59814000-59815200	Strong transcription	Dnd41	blood
26	chr8:59814000-59815800	Enhancers	Brain Hippocampus Middle	brain
27	chr8:59814000-59816400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr8:59814600-59815400	Weak transcription	Fetal Brain Female	brain
29	chr8:59814800-59816800	Enhancers	Fetal Brain Male	brain
30	chr8:59815000-59815400	Weak transcription	Brain Germinal Matrix	brain
31	chr8:59815000-59815600	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr8:59815000-59816400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr8:59815000-59820800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links