Variant report

Variant	rs34434301
Chromosome Location	chr8:59875447-59875448
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1105608	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11779544	0.87[EUR][1000 genomes]
rs11783096	0.87[EUR][1000 genomes]
rs11784291	0.83[EUR][1000 genomes]
rs13252116	0.83[EUR][1000 genomes]
rs13258467	0.85[EUR][1000 genomes]
rs13259869	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13262426	0.83[EUR][1000 genomes]
rs13262617	0.88[AFR][1000 genomes]
rs16924199	0.87[EUR][1000 genomes]
rs16924207	0.83[EUR][1000 genomes]
rs16924213	0.83[EUR][1000 genomes]
rs16924253	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs17232126	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6988646	0.83[EUR][1000 genomes]
rs71521437	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
2	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:59867200-59878600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:59868000-59880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
8	chr8:59869800-59876800	Weak transcription	Gastric	stomach
9	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:59871400-59877200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:59871600-59878000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr8:59871600-59878000	Weak transcription	HSMM	muscle
13	chr8:59871800-59878600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:59871800-59878600	Weak transcription	NHLF	lung
15	chr8:59872400-59878600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr8:59872400-59878600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
18	chr8:59872600-59878600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr8:59872600-59880200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:59872600-59882400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:59872800-59876200	Weak transcription	Stomach Mucosa	stomach
22	chr8:59872800-59876400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr8:59872800-59877000	Weak transcription	Small Intestine	intestine
24	chr8:59872800-59878600	Weak transcription	Fetal Stomach	stomach
25	chr8:59872800-59880000	Weak transcription	Pancreas	Pancrea
26	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr8:59873000-59883000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr8:59873600-59878000	Weak transcription	Osteobl	bone
29	chr8:59873600-59878400	Weak transcription	Fetal Heart	heart
30	chr8:59873600-59878600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr8:59873600-59887600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr8:59874000-59876600	Enhancers	Primary T cells fromperipheralblood	blood
34	chr8:59874000-59878600	Weak transcription	NHDF-Ad	bronchial
35	chr8:59874600-59876000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr8:59874800-59876400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
37	chr8:59874800-59887600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr8:59875000-59876000	Strong transcription	Dnd41	blood
39	chr8:59875000-59876400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:59875200-59875800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr8:59875200-59876000	Strong transcription	Thymus	Thymus
42	chr8:59875400-59876600	Strong transcription	Fetal Thymus	thymus

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