Variant report

Variant	rs17232126
Chromosome Location	chr8:59839398-59839399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59838431..59840418-chr8:59841097..59843754,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10098381	0.88[CEU][hapmap]
rs10504273	0.88[CEU][hapmap]
rs10504275	0.88[CEU][hapmap]
rs1105608	0.86[ASW][hapmap];1.00[CEU][hapmap];0.90[LWK][hapmap];0.82[MKK][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11777659	0.88[CEU][hapmap]
rs11778333	0.87[CEU][hapmap]
rs11779544	1.00[CEU][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs11783096	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11784073	0.85[CEU][hapmap]
rs11784291	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs13252116	0.87[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13258467	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13259869	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13262426	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13262617	0.86[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs16924199	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs16924207	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16924213	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs16924253	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16924314	0.88[CEU][hapmap]
rs17232411	0.87[ASW][hapmap]
rs17241424	0.88[CEU][hapmap]
rs17301816	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs34434301	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6984848	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs6988646	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6996574	0.88[CEU][hapmap]
rs71521437	0.86[AFR][1000 genomes]
rs7823862	1.00[CEU][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59811600-59849000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr8:59811800-59848800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:59816000-59840000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:59816200-59839800	Weak transcription	Fetal Stomach	stomach
6	chr8:59816400-59840200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:59817000-59847000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:59823800-59846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:59824000-59840000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:59824200-59849600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:59825200-59845600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:59827200-59839600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr8:59827200-59840000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:59827400-59843000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr8:59831200-59860200	Weak transcription	Gastric	stomach
17	chr8:59832200-59839400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr8:59834000-59840000	Weak transcription	Fetal Intestine Small	intestine
19	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:59834400-59850800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr8:59835200-59841000	Strong transcription	Primary T cells from cord blood	blood
22	chr8:59835400-59841000	Strong transcription	Fetal Thymus	thymus
23	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr8:59836000-59840000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr8:59836600-59840000	Weak transcription	Dnd41	blood
26	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr8:59837800-59839600	Weak transcription	Osteobl	bone
28	chr8:59837800-59845800	Weak transcription	HUVEC	blood vessel
29	chr8:59838600-59841000	Strong transcription	Thymus	Thymus
30	chr8:59839000-59839600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine

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