Variant report

Variant	rs16924213
Chromosome Location	chr8:59806411-59806412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59801933..59804319-chr8:59804381..59806631,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10098381	0.88[CEU][hapmap]
rs10504273	0.88[CEU][hapmap]
rs10504275	0.88[CEU][hapmap]
rs1105608	1.00[CEU][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs11777659	0.88[CEU][hapmap]
rs11778333	0.87[CEU][hapmap]
rs11779544	1.00[CEU][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes]
rs11783096	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11784073	0.85[CEU][hapmap]
rs11784291	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13252116	1.00[CEU][hapmap];0.95[GIH][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];1.00[EUR][1000 genomes]
rs13258467	0.98[EUR][1000 genomes]
rs13259869	0.83[EUR][1000 genomes]
rs13262426	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13262617	0.86[GIH][hapmap]
rs16924199	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16924207	1.00[CEU][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16924253	0.98[EUR][1000 genomes]
rs16924314	0.88[CEU][hapmap]
rs17232126	1.00[CEU][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs17241424	0.88[CEU][hapmap]
rs17301816	1.00[CEU][hapmap]
rs34434301	0.83[EUR][1000 genomes]
rs6984848	1.00[CEU][hapmap]
rs6988646	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6996574	0.88[CEU][hapmap]
rs7823862	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890940	chr8:59785412-59809785	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr8:59773400-59808200	Weak transcription	Thymus	Thymus
3	chr8:59790800-59811200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr8:59791400-59811000	Weak transcription	Brain Angular Gyrus	brain
5	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
6	chr8:59794800-59811000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr8:59800600-59809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr8:59800800-59809600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr8:59800800-59810600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:59800800-59811000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:59801000-59808000	Weak transcription	Dnd41	blood
12	chr8:59801400-59811000	Weak transcription	Primary T cells from cord blood	blood
13	chr8:59802200-59810800	Weak transcription	HUVEC	blood vessel
14	chr8:59802800-59826600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr8:59804200-59811000	Weak transcription	Gastric	stomach
16	chr8:59804600-59806600	Strong transcription	Fetal Thymus	thymus
17	chr8:59805000-59812200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr8:59805000-59815200	Weak transcription	Fetal Heart	heart
19	chr8:59805200-59815600	Weak transcription	Fetal Stomach	stomach
20	chr8:59805400-59808000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr8:59805400-59808200	Weak transcription	Osteobl	bone
22	chr8:59805400-59808400	Weak transcription	Fetal Brain Male	brain
23	chr8:59805400-59810600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:59805400-59826800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:59805600-59811000	Weak transcription	NHDF-Ad	bronchial
26	chr8:59806000-59814000	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr8:59806200-59806600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr8:59806400-59806600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr8:59806400-59815400	Weak transcription	Colon Smooth Muscle	Colon

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